Basic Information
Locus ID:
Chr15G002520
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 1951294 | 1952894 | - | Chr15G002520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 43 | 3.53E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 83 | 380 | 1.79E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 62 | 385 | 3.2E-9 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 37 | 8.861604 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59200.2 | - | 0 |
| RefSeq | XP_044964313.1 | F-box/FBD/LRR-repeat protein At5g53840-like [Hordeum vulgare subsp. vulgare] | 0 |
| TrEMBL | A0A8I6WXA7 | F-box domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_8AG0626110, gene-QOZ80_8BG0654320 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0112200.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_021187, gene-QYE76_021241, gene-QYE76_038734 ... |
| Poaceae | Oryza sativa | 1 | LOC_Os08g24370.1 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0305480, Pt_Chr0305481, Pt_Chr0305483, Pt_Chr0305500 ... |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G001210, Chr15G002520, Chr29G001410 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G230700 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG012690, gene_TRIDC2AG012730 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS2D02G106100.1, TraesCS2D02G106500.1.cds1 ... |