Basic Information
Locus ID:
Chr15G001870
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 1300893 | 1304455 | - | Chr15G001870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 224 | 278 | 1.5E-8 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 82 | 2.3E-9 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 89 | 208 | 5.5E-16 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 321 | 376 | 3.53E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 278 | 3.29E-53 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 150 | 285 | 1.5E-27 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 13 | 149 | 1.1E-31 | IPR036770 |
| SMART | SM00248 | ANK_2a | 181 | 210 | 4.9E-7 | IPR002110 |
| SMART | SM00248 | ANK_2a | 224 | 253 | 0.0019 | IPR002110 |
| SMART | SM00248 | ANK_2a | 118 | 148 | 2.7 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 80 | 7.7E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 84 | 113 | 0.016 | IPR002110 |
| SMART | SM00184 | ring_2 | 322 | 368 | 0.0018 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 224 | 255 | 10.28545 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 74 | 11.107922 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 322 | 369 | 9.818985 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 84 | 115 | 8.852755 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 74 | 11.14024 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 118 | 139 | 8.70963 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 224 | 256 | 11.48747 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 118 | 139 | 8.693567 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 84 | 116 | 9.93829 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 181 | 208 | 12.99165 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 181 | 208 | 13.03665 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 337 | 346 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 182 | 197 | 4.9E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 240 | 254 | 4.9E-6 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_004954184.1 | probable E3 ubiquitin-protein ligase XBOS32 [Setaria italica] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | K3YRW7 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101769393 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology