Basic Information
Locus ID:
Chr15G000990
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 744310 | 752254 | + | Chr15G000990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 512 | 797 | 9.62272E-64 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 763 | 797 | 0.042 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 559 | 590 | 1.5E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 1.4E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 598 | 634 | 5.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 681 | 714 | 4.8E-4 | IPR001680 |
| SUPERFAMILY | SSF81995 | beta-sandwich domain of Sec23/24 | 356 | 422 | 3.14E-5 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 509 | 797 | 1.63E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 651 | 797 | 3.7E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 499 | 650 | 3.4E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 676 | 714 | 9.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 594 | 634 | 2.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 758 | 797 | 4.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 717 | 756 | 0.68 | IPR001680 |
| SMART | SM00320 | WD40_4 | 551 | 590 | 8.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 509 | 548 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 637 | 673 | 21.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 765 | 797 | 12.130133 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 601 | 643 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 558 | 590 | 9.941962 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 683 | 723 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.035233 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 558 | 590 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 601 | 635 | 8.65015 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 765 | 797 | 13.014815 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 425 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_039778702.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 [Panicum virgatum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0XZB3 | LisH domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1KG539700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology