Basic Information
Locus ID:
Chr15G000360
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 396447 | 403521 | - | Chr15G000360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 686 | 726 | 2.86501E-19 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 684 | 731 | 1.4E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 686 | 732 | 1.52E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 673 | 737 | 6.1E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 687 | 726 | 11.058237 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 443 | 466 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 232 | - | - |
| Coils | Coil | Coil | 63 | 83 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025804336.1 | uncharacterized protein LOC112883265 isoform X2 [Panicum hallii] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UWH3 | RING-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_19136 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology