Basic Information
Locus ID:
Chr15G000180
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
A domain family that is part of the cupin metalloenzyme superfamily.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000015 | 285751 | 296276 | - | Chr15G000180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10497 | Zinc-finger domain of monoamine-oxidase A repressor R1 | 248 | 313 | 3.6E-6 | IPR018866 |
| Pfam | PF02373 | JmjC domain, hydroxylase | 939 | 1041 | 2.2E-15 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 585 | 1081 | 3.57E-34 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 890 | 1067 | 4.9E-69 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 568 | 816 | 6.4E-89 | - |
| SMART | SM00384 | AT_hook_2 | 205 | 218 | 57.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 109 | 121 | 0.62 | IPR017956 |
| SMART | SM00558 | cupin_9 | 687 | 1058 | 1.8E-76 | IPR003347 |
| SMART | SM00384 | AT_hook_2 | 160 | 172 | 4.6 | IPR017956 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 706 | 1058 | 26.711103 | IPR003347 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 251 | 298 | 9.361642 | IPR001841 |
| PRINTS | PR00929 | AT-hook-like domain signature | 204 | 214 | 1.2E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 158 | 169 | 1.2E-6 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 109 | 119 | 1.2E-6 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 891 | 910 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1109 | 1136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1096 | 1136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 226 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 847 | 871 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62310.1 | transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_025799182.1 | lysine-specific demethylase JMJ25-like isoform X3 [Panicum hallii] | 0 |
| C0SV12 | Lysine-specific demethylase JMJ29 OS=Arabidopsis thaliana OX=3702 GN=JMJ29 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UVL2 | Lysine-specific demethylase JMJ25 OS=Eragrostis curvula OX=38414 GN=EJB05_19109 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology