Basic Information
Locus ID:
Chr14G017510
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000014 | 48068817 | 48071218 | - | Chr14G017510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 168 | 296 | 2.18386E-68 | - |
| CDD | cd16571 | RING-HC_SIAHs | 52 | 90 | 6.42341E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 96 | 295 | 1.3E-79 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 107 | 299 | 2.81E-48 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 52 | 95 | 3.79E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 162 | 7.9E-17 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 166 | 295 | 3.7E-39 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 96 | 8.9E-6 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 54 | 90 | 9.346889 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 107 | 167 | 14.347631 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_025816186.1 | E3 ubiquitin-protein ligase SINAT5-like [Panicum hallii] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UHQ6 | RING-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_32776 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology