Basic Information
Locus ID:
Chr14G017170
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000014 | 47856284 | 47862272 | - | Chr14G017170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 570 | 703 | 2.83168E-23 | - |
| Pfam | PF17862 | AAA+ lid domain | 726 | 766 | 2.1E-11 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 572 | 702 | 1.7E-38 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 532 | 773 | 4.32E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 531 | 811 | 2.8E-97 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 704 | 806 | 2.8E-97 | - |
| SMART | SM00382 | AAA_5 | 568 | 705 | 6.6E-21 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 675 | 694 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 515 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_039845848.1 | uncharacterized protein LOC120705524 isoform X4 [Panicum virgatum] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9SVE4 | AAA domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_51540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology