Basic Information
Locus ID:
Chr14G015440
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
DNA binding domain with preference for A/T rich regions
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000014 | 46532301 | 46534178 | + | Chr14G015440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06257 | DnaJ | 75 | 135 | 1.52984E-4 | IPR001623 |
| SUPERFAMILY | SSF46565 | Chaperone J-domain | 68 | 143 | 2.3E-6 | IPR036869 |
| Gene3D | G3DSA:1.10.287.110 | DnaJ domain | 59 | 165 | 5.4E-6 | IPR036869 |
| ProSiteProfiles | PS50076 | dnaJ domain profile. | 75 | 146 | 9.053229 | IPR001623 |
| PRINTS | PR01217 | Proline rich extensin signature | 176 | 188 | 3.9E-13 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 219 | 231 | 3.9E-13 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 192 | 208 | 3.9E-13 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 232 | 253 | 3.9E-13 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 243 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004957058.1 | proline-rich extensin-like protein EPR1 [Setaria italica] | 0 |
| TrEMBL | A0A0A9MY34 | J domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology