Basic Information
Locus ID:
Chr14G013570
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000014 | 44475649 | 44480792 | + | Chr14G013570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.99868E-31 | - |
| Pfam | PF00627 | UBA/TS-N domain | 156 | 194 | 4.9E-14 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 4 | 76 | 9.5E-19 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 256 | 311 | 3.2E-21 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 340 | 376 | 1.7E-9 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 153 | 201 | 1.05E-10 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 93 | 2.76E-23 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 322 | 389 | 2.07E-13 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 252 | 317 | 3.01E-20 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 79 | 4.3E-25 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 333 | 380 | 1.5E-17 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 246 | 311 | 2.1E-24 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 149 | 199 | 2.7E-21 | - |
| SMART | SM00727 | CBM | 254 | 297 | 3.4E-6 | IPR006636 |
| SMART | SM00165 | uba_6 | 341 | 378 | 7.6E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 156 | 196 | 1.8E-5 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 8.0E-21 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 382 | 6.1E-107 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.413647 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 339 | 379 | 13.968622 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 154 | 197 | 12.450505 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 367 | 382 | 1.4E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 335 | 351 | 1.4E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 282 | 304 | 1.4E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 352 | 366 | 1.4E-28 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 109 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_004956778.1 | probable ubiquitin receptor RAD23 [Setaria italica] | 0 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9TDQ9 | Ubiquitin receptor RAD23 OS=Eragrostis curvula OX=38414 GN=EJB05_42971 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology