Basic Information
Locus ID:
Chr14G008290
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
oxidation-reduction process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000014 | 29978565 | 29996987 | - | Chr14G008290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05327 | retinol-DH_like_SDR_c_like | 610 | 886 | 7.06003E-100 | - |
| Pfam | PF00106 | short chain dehydrogenase | 612 | 819 | 7.9E-27 | IPR002347 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 609 | 870 | 8.5E-50 | IPR036291 |
| Gene3D | G3DSA:3.40.50.720 | - | 603 | 894 | 4.0E-78 | - |
| ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 48 | 70 | 9.701866 | IPR013087 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 50 | 70 | - | IPR013087 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 802 | 819 | 1.0E-12 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 612 | 629 | 1.0E-12 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 688 | 699 | 1.0E-12 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 738 | 754 | 1.0E-12 | IPR002347 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11410.1 | NAD(P)-binding Rossmann-fold superfamily protein. | 0 |
| RefSeq | XP_022680015.1 | uncharacterized protein LOC101770765 [Setaria italica] | 0 |
| Q6RVV4 | Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum OX=3888 GN=TIC32 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TI99 | Helicase ATP-binding domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_44172 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg2285, jg33969 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16141 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018861 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g055090 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38403, Sbi_jg6510 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15407 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006499 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01956, Sgl07112 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000443, gene:ENSEOMG00000028832 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0003060, CQ.Regalona.r1.3BG0003320 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30182980 |
| Apiaceae | Apium graveolens | 2 | Ag10G02606, Ag2G02026 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G010450, COCNU_09G007910 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698622, gene-LOC103705525 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2103.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G08008 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G25610.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024755m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g23640.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g082020.2N, BniB05g011720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1455 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1548 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g01110 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g07070 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11787, nbisL1-mrna-12618 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2747 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00010370, Pov_00040982 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G03961, Lb1G03962, Lb1G04004 |
| Poaceae | Echinochloa crus-galli | 5 | AH03.1126, BH03.1289, BH09.419, CH03.1449, CH03.91 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0331730.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_020491, gene-QYE76_040056 |
| Poaceae | Oryza coarctata | 1 | Oco18G012220 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g39660.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G134800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0700637 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G008290, Chr21G008470 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G013100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG047340, gene_TRIDC4BG001310 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G310700.1, TraesCS4B02G003500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb095880_P002, Zm00001eb224460_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31801 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32022 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.1417, evm.TU.LG11.1643, evm.TU.LG14.699 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g05810 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_11_RagTag.1409, evm.TU.Scaffold_4_RagTag.109 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12700, nbisL1-mrna-29232 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7250 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2170 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.68, evm.TU.utg000010l.386 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000070, Maker00009070 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1089, nbisL1-mrna-2346 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20576, nbisL1-mrna-6291 |
| Salicaceae | Populus euphratica | 2 | populus_peu29301, populus_peu30662 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132631933, gene-LOC132639318 |
| Solanaceae | Solanum chilense | 2 | SOLCI002473000, SOLCI004626000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012418 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.6434_chr04_+, gene_10808 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G2368, TC08G1588 |
| Zosteraceae | Zostera marina | 2 | Zosma01g24230.v3.1, Zosma03g26760.v3.1 |