Basic Information
Locus ID:
Chr14G005290
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000014 | 7208846 | 7209960 | - | Chr14G005290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00139 | Legume lectin domain | 149 | 195 | 4.3E-10 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 27 | 195 | 1.97E-21 | IPR013320 |
| Gene3D | G3DSA:2.60.120.200 | - | 80 | 196 | 6.6E-13 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 25 | 79 | 9.2E-6 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 253 | 310 | 1.1E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 319 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021303724.1 | L-type lectin-domain containing receptor kinase IX.1 [Sorghum bicolor] | 0 |
| P16270 | Non-seed lectin OS=Pisum sativum OX=3888 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1E5V4E6 | L-type lectin-domain containing receptor kinase IX.1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0019070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah001975, Ah001976 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30062370 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0944 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g31340, gene.Thate01g31360, gene.Thate06g23940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0430540.1.CDS1 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g16670.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0704353 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr14G005290 |
| Poaceae | Zea mays | 1 | Zm00001eb148870_P001 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16554 |