Basic Information
Locus ID:
Chr14G005250
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000014 | 7146394 | 7153591 | + | Chr14G005250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 179 | 228 | 6.24308E-30 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.34706E-22 | - |
| Pfam | PF00627 | UBA/TS-N domain | 185 | 223 | 5.2E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 386 | 421 | 9.4E-10 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 304 | 359 | 1.9E-19 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 3.5E-15 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 181 | 237 | 9.73E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 300 | 361 | 7.32E-19 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 91 | 2.76E-19 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 370 | 428 | 4.3E-13 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.0E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 178 | 228 | 2.8E-20 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 293 | 360 | 3.5E-25 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 378 | 425 | 5.1E-21 | - |
| SMART | SM00727 | CBM | 300 | 345 | 2.7E-7 | IPR006636 |
| SMART | SM00165 | uba_6 | 185 | 225 | 4.0E-4 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 4.8E-17 | IPR000626 |
| SMART | SM00165 | uba_6 | 386 | 423 | 7.8E-9 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 429 | 3.1E-102 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.780491 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 183 | 226 | 12.570991 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 384 | 424 | 14.281885 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 397 | 411 | 4.4E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 412 | 427 | 4.4E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 380 | 396 | 4.4E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 330 | 352 | 4.4E-30 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 253 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 269 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_025813528.1 | ubiquitin receptor RAD23d-like [Panicum hallii] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A2S3HL08 | Ubiquitin receptor RAD23 OS=Panicum hallii OX=206008 GN=PAHAL_4G281300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology