Basic Information
Locus ID:
Chr14G004930
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000014 | 6130801 | 6132212 | + | Chr14G004930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 36 | 76 | 3.69967E-21 | - |
| Pfam | PF04564 | U-box domain | 32 | 103 | 4.0E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 204 | 420 | 3.78E-17 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 20 | 105 | 2.3E-28 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 189 | 419 | 1.2E-17 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 31 | 104 | 2.2E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 35 | 98 | 2.7E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 31 | 105 | 32.536251 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_004965131.1 | U-box domain-containing protein 21 [Setaria italica] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | K3XWV8 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101765542 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology