Basic Information
Locus ID:
Chr14G004730
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
HhH-GPD superfamily base excision DNA repair protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000014 | 5720457 | 5725730 | - | Chr14G004730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00056 | ENDO3c | 124 | 252 | 8.15802E-20 | IPR003265 |
| SUPERFAMILY | SSF48150 | DNA-glycosylase | 129 | 284 | 4.87E-30 | IPR011257 |
| Gene3D | G3DSA:1.10.340.30 | Hypothetical protein; domain 2 | 124 | 200 | 9.9E-28 | - |
| Gene3D | G3DSA:1.10.1670.10 | - | 201 | 280 | 9.9E-28 | IPR023170 |
| SMART | SM00478 | endo3end | 121 | 254 | 6.8E-5 | IPR003265 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 31 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47830.1 | DNA glycosylase superfamily protein. | 0 |
| RefSeq | XP_004965098.1 | putative DNA glycosylase At3g47830 isoform X2 [Setaria italica] | 0 |
| F4JCQ3 | Putative DNA glycosylase At3g47830 OS=Arabidopsis thaliana OX=3702 GN=At3g47830 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J9TKP7 | ENDO3c domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_45482 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27485 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13717 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001136 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g116310 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30469, Sbi_jg58783 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28652 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015003 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55291, Sgl60557 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005221, gene:ENSEOMG00000023087 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5BG0023550 |
| Apiaceae | Apium graveolens | 1 | AgUnG00008 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G009580 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G17583 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G47830.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010580m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g14130.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g052000.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1872 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2057 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g10850 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g11190 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11934 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.812 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26843 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.977, BH06.999, CH06.1096 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0515230, gene-QOZ80_6BG0466940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0667760.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028996 |
| Poaceae | Oryza coarctata | 2 | Oco11G006320, Oco12G006350 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g13070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G102000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0404644, Pt_Chr0404708 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G018770, Chr11G019010, Chr14G004730 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G357000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG024300, gene_TRIDC7BG014960 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G194800.1, TraesCS7B02G100500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb279940_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45440 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31660 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2537, evm.TU.LG14.1676 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g06740 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.508 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28858 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8175 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1826 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.327 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000029 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14579 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1491 |
| Salicaceae | Populus euphratica | 1 | populus_peu28586 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632751 |
| Solanaceae | Solanum chilense | 1 | SOLCI000409700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012202 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20091_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2386 |
| Zosteraceae | Zostera marina | 1 | Zosma03g04150.v3.1 |