Basic Information
Locus ID:
Chr14G003080
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000014 | 2463752 | 2465053 | + | Chr14G003080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 129 | 172 | 1.00741E-20 | - |
| Pfam | PF13639 | Ring finger domain | 129 | 172 | 7.3E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 125 | 177 | 1.53E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 181 | 3.1E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 130 | 171 | 1.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 130 | 172 | 12.740079 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 327 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 0 |
| RefSeq | XP_039842795.1 | RING-H2 finger protein ATL3-like [Panicum virgatum] | 0 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 0 | |
| TrEMBL | K4LJW5 | Ring-H2 zinc finger protein OS=Coix lacryma-jobi OX=4505 GN=znf PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology