Basic Information
Locus ID:
Chr14G000370
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000014 | 271148 | 273434 | - | Chr14G000370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 235 | 277 | 6.67694E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 440 | 478 | 2.8E-7 | IPR000225 |
| Pfam | PF04564 | U-box domain | 231 | 301 | 4.1E-24 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 358 | 396 | 8.4E-11 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 228 | 305 | 2.59E-32 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 329 | 604 | 6.53E-49 | IPR016024 |
| Gene3D | G3DSA:1.20.930.20 | - | 3 | 100 | 2.2E-5 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 445 | 609 | 2.4E-27 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 327 | 444 | 1.3E-25 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 231 | 304 | 1.2E-32 | IPR013083 |
| SMART | SM00185 | arm_5 | 357 | 397 | 1.4E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 439 | 479 | 0.18 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 234 | 297 | 2.1E-37 | IPR003613 |
| SMART | SM00185 | arm_5 | 521 | 561 | 69.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 480 | 520 | 320.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 398 | 438 | 0.76 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 368 | 410 | 13.2824 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 230 | 304 | 47.989689 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_025811509.1 | U-box domain-containing protein 12 [Panicum hallii] | 0 |
| Q5VRH9 | U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SK41 | RING-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_55333 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology