Basic Information
Locus ID:
Chr14G000340
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000014 | 237532 | 243795 | + | Chr14G000340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 634 | 684 | 5.4E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 452 | 507 | 2.3E-16 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 782 | 839 | 6.64E-8 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 693 | 745 | 1.93E-11 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 944 | 1045 | 4.83E-8 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 784 | 846 | 1.1E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 933 | 1045 | 9.3E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 686 | 775 | 5.4E-13 | IPR013083 |
| SMART | SM00249 | PHD_3 | 786 | 843 | 0.0029 | IPR001965 |
| SMART | SM00249 | PHD_3 | 700 | 740 | 5.0E-6 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 784 | 845 | 8.5021 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 787 | 842 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 701 | 739 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 114 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 88 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | NP_001336837.1 | uncharacterized protein LOC100274990 [Zea mays] | 0 |
| TrEMBL | A0A5J9SK28 | N-acetyltransferase domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_55330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology