Basic Information
Locus ID:
Chr13G021810
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ankyrin repeats (many copies)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 49100544 | 49108035 | + | Chr13G021810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 112 | 132 | 0.011 | IPR002110 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 46 | 97 | 6.7E-16 | - |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 188 | 249 | 3.3E-5 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 15 | 281 | 2.33E-45 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 323 | 384 | 5.3E-7 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 153 | 280 | 1.2E-19 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 6 | 151 | 8.2E-31 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 311 | 393 | 3.2E-7 | IPR013083 |
| SMART | SM00248 | ANK_2a | 185 | 214 | 2.2E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 4.0E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 0.84 | IPR002110 |
| SMART | SM00248 | ANK_2a | 228 | 260 | 0.043 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.065 | IPR002110 |
| SMART | SM00184 | ring_2 | 327 | 376 | 0.0029 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 9.118069 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 228 | 254 | 9.807884 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 185 | 214 | 10.816076 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 228 | 254 | 9.83145 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 327 | 377 | 9.863244 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.13699 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.63925 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 185 | 217 | 11.40734 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.522278 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 342 | 351 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 493 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_052133807.1 | probable E3 ubiquitin-protein ligase XBOS33 [Oryza glaberrima] | 0 |
| Q337A0 | Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS33 PE=2 SV=1 | 0 | |
| TrEMBL | B8BHX4 | RING-type domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_34359 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology