Basic Information
Locus ID:
Chr13G020840
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Hippocampus abundant transcript-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 46818488 | 46822688 | + | Chr13G020840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 10 | 434 | 8.65097E-43 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 11 | 399 | 9.0E-23 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 10 | 438 | 3.27E-38 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 7 | 442 | 1.5E-40 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 10 | 445 | 12.377091 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 68 | 85 | - | IPR005829 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 383 | 406 | 4.6E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 323 | 344 | 4.6E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 56 | 72 | 4.6E-5 | IPR001958 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 240 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_025793849.1 | hippocampus abundant transcript 1 protein isoform X1 [Panicum hallii] | 0 |
| P02982 | Tetracycline resistance protein, class A OS=Escherichia coli OX=562 GN=tetA PE=3 SV=2 | 0 | |
| TrEMBL | A0A8T0MRF0 | MFS domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG467200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology