Basic Information
Locus ID:
Chr13G020530
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 46174726 | 46179088 | + | Chr13G020530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 43 | 224 | 6.1453E-40 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 842 | 883 | 2.12895E-21 | - |
| Pfam | PF00069 | Protein kinase domain | 553 | 783 | 1.8E-42 | IPR000719 |
| Pfam | PF04564 | U-box domain | 839 | 909 | 6.3E-18 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 532 | 811 | 5.26E-66 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 827 | 908 | 6.53E-24 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 117 | 189 | 5.86E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 837 | 910 | 2.0E-27 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 625 | 826 | 1.1E-44 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 42 | 221 | 1.1E-6 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 530 | 624 | 7.7E-30 | - |
| SMART | SM00220 | serkin_6 | 552 | 813 | 1.1E-30 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 841 | 904 | 8.2E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 837 | 910 | 31.996662 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 552 | 819 | 34.70393 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 670 | 682 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 558 | 579 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 347 | - | - |
| Coils | Coil | Coil | 497 | 524 | - | - |
| Coils | Coil | Coil | 427 | 489 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_025791423.1 | U-box domain-containing protein 33-like isoform X1 [Panicum hallii] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9V6H1 | E3 ubiquitin ligase OS=Eragrostis curvula OX=38414 GN=EJB05_23483 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology