Basic Information
Locus ID:
Chr13G020000
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
atg2484-1,g2484-1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 44179145 | 44191278 | + | Chr13G020000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05641 | Agenet domain | 1575 | 1639 | 9.1E-12 | IPR008395 |
| SMART | SM00743 | agenet_At_2 | 1658 | 1718 | 1.1E-4 | IPR014002 |
| SMART | SM00743 | agenet_At_2 | 1570 | 1632 | 4.4E-5 | IPR014002 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1895 | 1910 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 664 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 680 | 697 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1732 | 1787 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 631 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1930 | 1948 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1519 | 1537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1846 | 2069 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1001 | 1024 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1001 | 1016 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1981 | 2008 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1175 | 1189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 810 | 836 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1732 | 1750 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1965 | 1980 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 893 | 907 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 876 | 892 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 876 | 920 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1158 | 1174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1508 | 1538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1153 | 1212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 617 | 631 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 644 | 697 | - | - |
| Coils | Coil | Coil | 1415 | 1435 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17330.1 | G2484-1 protein. gene of unknown function expressed in seedlings, flower buds and stems | 0 |
| RefSeq | XP_025794830.1 | uncharacterized protein LOC112875259 isoform X5 [Panicum hallii] | 0 |
| F4JP43 | Protein SWOLLEN 1 OS=Arabidopsis thaliana OX=3702 GN=SWO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9V8A3 | G2484-1 protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_23399 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23346, jg37281 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1982 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004020 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g104420 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24173, Sbi_jg8012 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12028 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010764 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52382, Sgl57676 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007783, gene:ENSEOMG00000022617 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0004530, CQ.Regalona.r1.5BG0004950 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30142480 |
| Apiaceae | Apium graveolens | 3 | Ag6G00602, Ag6G01712, Ag8G00642 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G005380, COCNU_10G003770 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711651, gene-LOC103716542 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.3319.V1.1, AsparagusV1_10.788.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G25793, Ftri14G05894, Ftri16G00636 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G17330.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024186m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g16850.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g072700.2N, BniB05g019060.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0050 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0054 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno15g03800, gene.Cymno18g03850 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g04750 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00004065, Pov_00004184 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08381, Lb2G08382, Lb2G08400 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2920, BH01.3267, CH01.3497, CH09.628, CH09.629 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0116460, gene-QOZ80_2BG0170190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0058290.1 |
| Poaceae | Oryza coarctata | 2 | Oco19G010060, Oco20G009870 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g41030.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G288100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0503187 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G027900, Chr09G004840, Chr13G020000, Chr15G018950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G374200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG033390, gene_TRIDC1BG038740 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G221100.3, TraesCS1B02G234400.4 ... |
| Poaceae | Zea mays | 2 | Zm00001eb023270_P004, Zm00001eb391270_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-36325, nbis-gene-37989 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12904, Zma_g15674 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3240, evm.TU.LG10.935, evm.TU.LG16.358 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g04660 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.363, evm.TU.Scaffold_16_RagTag.341 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17996, nbisL1-mrna-22591 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12293, nbisL1-mrna-12294 |
| Rhizophoraceae | Ceriops zippeliana | 5 | nbisL1-mrna-20188, nbisL1-mrna-20189, nbisL1-mrna-8356 ... |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.152, evm.TU.utg000022l.291 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014378, Maker00018688 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16152, nbisL1-mrna-3429 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10731, nbisL1-mrna-6533 |
| Salicaceae | Populus euphratica | 2 | populus_peu03006, populus_peu33890 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635126 |
| Solanaceae | Solanum chilense | 1 | SOLCI002438600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027921 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.16277_chr06_-, STRG.23931_chr05_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3811, TC09G0347 |
| Zosteraceae | Zostera marina | 1 | Zosma02g19210.v3.1 |