Basic Information
Locus ID:
Chr13G019470
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 42807041 | 42871237 | + | Chr13G019470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3180 | 3338 | 2.1E-8 | IPR009543 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 108 | 3.4E-30 | IPR026854 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 372 | 7.4E-64 | IPR031646 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 552 | 765 | 2.2E-33 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1974 | 2116 | 4.7E-14 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4069 | 4156 | 4.8E-10 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2193 | 2339 | 1.0E-8 | IPR009291 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1515 | 1534 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1018 | 1037 | - | - |
| Coils | Coil | Coil | 376 | 396 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_034571744.1 | uncharacterized protein LOC117836430 isoform X1 [Setaria viridis] | 0 |
| Q54LB8 | Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9V822 | PH domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_23340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology