Basic Information
Locus ID:
Chr13G019420
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 42577098 | 42578980 | - | Chr13G019420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 150 | 193 | 1.32991E-19 | - |
| Pfam | PF13639 | Ring finger domain | 150 | 193 | 1.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 148 | 201 | 7.85E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 198 | 5.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 151 | 192 | 4.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 151 | 193 | 12.489278 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 294 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60220.1 | TOXICOS EN LEVADURA 4. Encodes a putative RING-H2 zinc finger protein ATL4 (ATL4). | 0 |
| RefSeq | XP_008658496.1 | RING-H2 finger protein ATL5 [Zea mays] | 0 |
| Q9LY41 | E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811MTL0 | RING-type domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS7899 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH01.2854, BH01.3191, CH01.3427 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0117160, gene-QOZ80_2BG0170840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0057210.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_012769, gene-QYE76_012817 |
| Poaceae | Oryza coarctata | 2 | Oco19G010540, Oco20G010360 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g41660.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G281100 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G005420, Chr13G019420 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G366200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG032510, gene_TRIDC1BG037800 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G215100.1.cds1, TraesCS1B02G228600.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb024020_P001, Zm00001eb390730_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-36411, nbis-gene-38050 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12941, Zma_g15712 |