Basic Information
Locus ID:
Chr13G018810
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 40037665 | 40044256 | + | Chr13G018810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 193 | 255 | 1.13626E-20 | IPR002048 |
| CDD | cd00051 | EFh | 117 | 179 | 5.68511E-12 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 117 | 178 | 5.1E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 191 | 254 | 5.9E-13 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 107 | 255 | 4.16E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 91 | 183 | 1.8E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 184 | 261 | 7.2E-22 | - |
| SMART | SM00054 | efh_1 | 229 | 257 | 4.1E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 153 | 181 | 0.026 | IPR002048 |
| SMART | SM00054 | efh_1 | 117 | 145 | 4.4E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 193 | 221 | 0.0014 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 113 | 148 | 14.346033 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 189 | 224 | 13.620752 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 149 | 184 | 10.440677 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 225 | 260 | 13.118635 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 202 | 214 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 162 | 174 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 126 | 138 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 238 | 250 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32250.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | NP_001152651.1 | Probable calcium-binding protein CML11 [Zea mays] | 0 |
| Q9AWK2 | Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9STD2 | Calcium-binding protein CML11 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_52327 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology