Basic Information
Locus ID:
Chr13G017990
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Chromo (CHRromatin Organisation MOdifier) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 36510064 | 36522189 | + | Chr13G017990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04716 | BAH_plantDCM_I | 99 | 225 | 6.08198E-56 | - |
| Pfam | PF01426 | BAH domain | 102 | 224 | 1.2E-12 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 415 | 724 | 1.2E-21 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 250 | 730 | 9.77E-55 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 338 | 396 | 1.16E-7 | IPR016197 |
| Gene3D | G3DSA:2.30.30.490 | - | 63 | 210 | 1.9E-42 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 211 | 413 | 3.3E-61 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 414 | 518 | 4.5E-42 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 519 | 693 | 3.2E-64 | - |
| SMART | SM00439 | BAH_4 | 100 | 225 | 4.6E-16 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 251 | 734 | 30.910955 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 100 | 225 | 17.455385 | IPR001025 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 470 | 483 | 9.6E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 252 | 268 | 9.6E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 424 | 438 | 9.6E-10 | IPR001525 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_002448525.1 | DNA (cytosine-5)-methyltransferase 1 [Sorghum bicolor] | 0 |
| Q8LPU5 | DNA (cytosine-5)-methyltransferase 3 OS=Zea mays OX=4577 GN=DMT105 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9V7C0 | Chromomethylase 3 OS=Eragrostis curvula OX=38414 GN=EJB05_23142 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology