Basic Information
Locus ID:
Chr13G017690
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 33519354 | 33525448 | - | Chr13G017690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 38 | 112 | 7.06E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 138 | 8.5E-6 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 320 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14835.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034576838.1 | zinc finger protein-like 1 homolog [Setaria viridis] | 0 |
| TrEMBL | A0A5J9V372 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_22294 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1163, jg28604 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9505 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah015765 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g189670 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25218, Sbi_jg9061 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19526 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011284 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl43379, Sgl48182 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012259, gene:ENSEOMG00000033768 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0011830, CQ.Regalona.r1.8BG0013780 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30106550 |
| Apiaceae | Apium graveolens | 1 | Ag1G00843 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G003040, COCNU_13G006780 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103705294, gene-LOC103718583, gene-LOC120107819 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3033.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri3G01155, Ftri3G09780 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G14835.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022769m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g28090.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g011790.2N, BniB04g027050.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0276 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0311 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g08960 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g19970 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.598 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012167 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16660 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2435, BH01.2772, CH01.2978 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0121330, gene-QOZ80_2BG0176510 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0032570.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_010920 |
| Poaceae | Oryza coarctata | 2 | Oco19G002550, Oco20G002710 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g20600.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K135200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502330 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr09G007400, Chr09G007410, Chr13G017690, Chr13G017700 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G234200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG018660, gene_TRIDC1BG022450 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G129200.1, TraesCS1B02G146000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb027340_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27556 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15923 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2606, evm.TU.LG08.188 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g20240 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2027, evm.TU.Scaffold_2_RagTag.406 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4789, nbisL1-mrna-5837 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14278 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3501 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.716, evm.TU.utg000016l.248 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004891, Maker00016543 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2549, nbisL1-mrna-4810 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13971, nbisL1-mrna-16496 |
| Salicaceae | Populus euphratica | 2 | populus_peu01618, populus_peu36220 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598948 |
| Solanaceae | Solanum chilense | 1 | SOLCI003636600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008572 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.12627_chr02_+, STRG.14563_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0788, TC12G0468 |
| Zosteraceae | Zostera marina | 1 | Zosma04g08050.v3.1 |