Basic Information
Locus ID:
Chr13G017140
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Salt stress response/antifungal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 29699930 | 29700719 | - | Chr13G017140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 39 | 133 | 2.3E-13 | IPR002902 |
| Gene3D | G3DSA:3.30.430.20 | - | 21 | 136 | 1.1E-15 | IPR038408 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 33 | 136 | 14.207721 | IPR002902 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 238 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002439110.2 | cysteine-rich repeat secretory protein 38 [Sorghum bicolor] | 0 |
| TrEMBL | A0A5J9SKD3 | Protein kinase domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_55195 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | BH05.601, CH01.3028, CH04.309 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_003593, gene-QYE76_017906, gene-QYE76_019077 ... |
| Poaceae | Oryza coarctata | 1 | Oco09G005110 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g10540.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G170900, gene-BS78_08G007300 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0106389, Pt_Chr0106422, Pt_Chr0501231, Pt_Chr0604613 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G007730, Chr13G017140 |
| Poaceae | Thinopyrum elongatum | 8 | Tel1E01G497600, Tel2E01G092800, Tel2E01G1016400 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2B02G628100.1, TraesCS2B02G628200.1 ... |