Basic Information
Locus ID:
Chr13G015490
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
EDR1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 22888985 | 22889884 | + | Chr13G015490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1 | 103 | 2.1E-25 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 114 | 1.35E-33 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 119 | 4.0E-37 | - |
| SMART | SM00220 | serkin_6 | 1 | 117 | 0.008 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 119 | 22.675896 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 71 | 83 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08720.2 | - | 0 |
| RefSeq | XP_002464586.2 | serine/threonine-protein kinase EDR1 isoform X3 [Sorghum bicolor] | 0 |
| Q9FPR3 | Serine/threonine-protein kinase EDR1 OS=Arabidopsis thaliana OX=3702 GN=EDR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A452YA46 | Protein kinase domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg15421, Sbi_jg20712, Sbi_jg40410, Sbi_jg49555 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120112214 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G10662 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0746s00001.v1.0 |
| Poaceae | Oryza coarctata | 1 | Oco04G011850 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr13G015490 |