Basic Information
Locus ID:
Chr13G014190
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 18934339 | 18938556 | - | Chr13G014190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 96 | 156 | 9.82545E-13 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 165 | 236 | 1.26244E-7 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 241 | 307 | 1.04752E-5 | - |
| Pfam | PF00240 | Ubiquitin family | 96 | 157 | 1.9E-14 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 16 | 82 | 4.8E-14 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 241 | 311 | 1.3E-7 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 160 | 238 | 5.63E-12 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 83 | 157 | 1.97E-18 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 7 | 82 | 2.7E-15 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 238 | 311 | 3.68E-11 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 83 | 162 | 1.5E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 235 | 321 | 8.7E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 163 | 234 | 9.5E-12 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 14 | 82 | 4.3E-17 | - |
| SMART | SM00213 | ubq_7 | 86 | 158 | 2.7E-11 | IPR000626 |
| SMART | SM00213 | ubq_7 | 163 | 238 | 0.019 | IPR000626 |
| SMART | SM00213 | ubq_7 | 14 | 83 | 1.2E-11 | IPR000626 |
| SMART | SM00213 | ubq_7 | 239 | 310 | 1.4 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 163 | 235 | 11.159102 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 239 | 314 | 10.941348 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 86 | 157 | 18.540962 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 14 | 83 | 15.94969 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 22 | 42 | 5.1E-10 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 64 | 85 | 5.1E-10 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 43 | 63 | 5.1E-10 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09790.1 | ubiquitin 8. encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions. | 0 |
| RefSeq | XP_004982880.1 | polyubiquitin [Setaria italica] | 0 |
| Q39256 | Polyubiquitin 8 OS=Arabidopsis thaliana OX=3702 GN=UBQ8 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0A8ZN82 | Polyubiquitin-like OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH01.1773, BH01.2094, CH01.2025, CH01.2026, CH01.2027 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127800, gene-QOZ80_2BG0183260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0042620.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_017527, gene-QYE76_067660 |
| Poaceae | Oryza coarctata | 2 | Oco19G005960, Oco20G005870 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g33620.1, LOC_Os11g18670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G206400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G011030, Chr13G014190 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG028140 |
| Poaceae | Triticum aestivum | 2 | TraesCS1B02G171700.1, TraesCS1D02G151600.1 |
| Poaceae | Zea mays | 1 | Zm00001eb045950_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19226 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16186 |