Basic Information
Locus ID:
Chr13G013420
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Vacuolar protein sorting-associated protein 62
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 17221180 | 17297320 | - | Chr13G013420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2610 | 2714 | 3.97306E-7 | - |
| CDD | cd00821 | PH | 828 | 925 | 4.19038E-5 | - |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2273 | 2358 | 8.5E-7 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 140 | 380 | 5.7E-64 | IPR031646 |
| Pfam | PF16909 | Vacuolar-sorting-associated 13 protein C-terminal | 3800 | 3902 | 3.9E-8 | IPR031645 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3236 | 3550 | 4.0E-14 | IPR009543 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 570 | 791 | 6.6E-30 | IPR031642 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1972 | 2123 | 8.6E-13 | IPR009291 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 7.7E-31 | IPR026854 |
| Pfam | PF00168 | C2 domain | 2671 | 2716 | 1.8E-4 | IPR000008 |
| SUPERFAMILY | SSF50729 | PH domain-like | 836 | 937 | 1.8E-6 | - |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2608 | 2716 | 8.91E-6 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2579 | 2735 | 1.9E-6 | IPR035892 |
| Gene3D | G3DSA:2.30.29.30 | - | 830 | 936 | 8.4E-6 | IPR011993 |
| SMART | SM00694 | dysfc | 2946 | 2985 | 0.0099 | IPR006614 |
| SMART | SM00233 | PH_update | 788 | 932 | 0.0018 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 827 | 930 | 6.9228 | IPR001849 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2589 | 2728 | 9.349337 | IPR000008 |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_034588860.1 | uncharacterized protein LOC117851161 isoform X1 [Setaria viridis] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9V3J0 | C2 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_21700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology