Basic Information
Locus ID:
Chr13G013410
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
ARID/BRIGHT DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 17176425 | 17181498 | + | Chr13G013410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 52 | 137 | 3.44632E-40 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 262 | 326 | 1.64042E-17 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 262 | 329 | 5.8E-14 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 56 | 137 | 7.4E-19 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 46 | 150 | 1.29E-28 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 259 | 331 | 1.57E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 41 | 158 | 1.8E-28 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 245 | 336 | 6.3E-20 | IPR036910 |
| SMART | SM00398 | hmgende2 | 261 | 330 | 1.6E-17 | IPR009071 |
| SMART | SM00501 | bright_3 | 51 | 142 | 8.7E-28 | IPR001606 |
| SMART | SM01014 | ARID_2 | 47 | 137 | 7.8E-27 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 262 | 329 | 14.433206 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 50 | 141 | 25.569647 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_039789598.1 | high mobility group B protein 15-like [Panicum virgatum] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0X0K7 | High mobility group B protein 15 OS=Panicum virgatum OX=38727 GN=PVAP13_1NG238400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology