Basic Information
Locus ID:
Chr13G009380
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 9905113 | 9912038 | + | Chr13G009380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 221 | 495 | 4.2E-42 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 75 | 122 | 1.85E-12 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 199 | 498 | 2.43E-73 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 297 | 517 | 8.6E-66 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 15 | 130 | 3.2E-15 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 189 | 296 | 5.1E-40 | - |
| SMART | SM00220 | serkin_6 | 220 | 497 | 1.2E-26 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 220 | 510 | 34.70393 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 226 | 248 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 346 | 358 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71830.1 | somatic embryogenesis receptor-like kinase 1. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later | 0 |
| RefSeq | XP_025805137.1 | LRR receptor kinase SERK2 [Panicum hallii] | 0 |
| Q7XV05 | LRR receptor kinase SERK2 OS=Oryza sativa subsp. japonica OX=39947 GN=SERK2 PE=1 SV=1 | 0 | |
| TrEMBL | N1R4V5 | Somatic embryogenesis receptor kinase 1 OS=Aegilops tauschii OX=37682 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology