HalophFGD

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Basic Information
Locus ID: Chr13G008330
Species & Taxonomic ID: Sporobolus alterniflorus & 29706
Genome Assembly: GWHCBIM00000000
Description: Pentacotripeptide-repeat region of PRORP
Maps and Mapping Data
Chromosome Start End Strand ID
GWHCBIM00000013 8742977 8744644 - Chr13G008330
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
0.00 0.00 Da 0.00 0.00 0.00
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF13041 PPR repeat family 366 410 3.9E-10 IPR002885
Pfam PF12854 PPR repeat 326 355 5.4E-7 IPR002885
Pfam PF13041 PPR repeat family 261 306 2.5E-12 IPR002885
Pfam PF01535 PPR repeat 126 154 0.038 IPR002885
Pfam PF12854 PPR repeat 223 253 1.8E-6 IPR002885
Pfam PF12854 PPR repeat 434 466 3.4E-9 IPR002885
Pfam PF01535 PPR repeat 194 215 0.4 IPR002885
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 288 357 1.0E-17 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 358 504 3.0E-26 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 90 218 8.4E-19 IPR011990
Gene3D G3DSA:1.25.40.10 Tetratricopeptide repeat domain 219 287 1.4E-16 IPR011990
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 369 401 1.2E-8 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 125 155 1.5E-4 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 297 331 4.3E-7 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 262 296 1.2E-9 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 441 473 2.4E-8 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 334 366 0.0012 IPR002885
TIGRFAM TIGR00756 PPR: pentatricopeptide repeat domain 227 259 8.3E-5 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 260 294 11.454616 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 225 259 12.682281 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 295 329 11.125777 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 330 365 9.54735 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 366 400 11.958836 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 438 472 12.254791 IPR002885
ProSiteProfiles PS51375 Pentatricopeptide (PPR) repeat profile. 122 156 8.692369 IPR002885
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G04130.1 Tetratricopeptide repeat (TPR)-like superfamily protein. 0
RefSeq XP_004953004.1 pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Setaria italica] 0
Swiss-Prot Q9M8W9 Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g04130 PE=2 SV=2 0
TrEMBL A0A5J9SX49 Pentatricopeptide repeat-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_50945 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg5752, jg9557
Aizoaceae Mesembryanthemum crystallinum 2 gene_3540, gene_5373
Amaranthaceae Beta vulgaris 1 BVRB_6g151540
Amaranthaceae Salicornia bigelovii 4 Sbi_jg26547, Sbi_jg34020, Sbi_jg42730, Sbi_jg45355
Amaranthaceae Salicornia europaea 2 Seu_jg11218, Seu_jg15074
Amaranthaceae Suaeda aralocaspica 1 GOSA_00002583
Amaranthaceae Suaeda glauca 4 Sgl35089, Sgl40474, Sgl73833, Sgl77335
Amaranthaceae Chenopodium album 4 gene:ENSEOMG00000002884, gene:ENSEOMG00000006357 ...
gene:ENSEOMG00000015373, gene:ENSEOMG00000037249
Amaranthaceae Chenopodium quinoa 3 CQ.Regalona.r1.6AG0003540, CQ.Regalona.r1.6BG0003500 ...
CQ.Regalona.r1.7AG0010320
Anacardiaceae Pistacia vera 2 pistato.v30228080, pistato.v30236350
Apiaceae Apium graveolens 2 Ag1G01844, Ag5G02278
Arecaceae Cocos nucifera 3 COCNU_03G001310, COCNU_03G001330, COCNU_04G007320
Arecaceae Phoenix dactylifera 2 gene-LOC103718091, gene-LOC103718684
Asparagaceae Asparagus officinalis 2 AsparagusV1_03.2689.V1.1, AsparagusV1_08.1881.V1.1
Asteraceae Flaveria trinervia 2 Ftri15G22017, Ftri9G15803
Brassicaceae Arabidopsis thaliana 2 AT3G04130.1, AT3G22670.1
Brassicaceae Eutrema salsugineum 2 Thhalv10020419m.g.v1.0, Thhalv10020548m.g.v1.0
Brassicaceae Schrenkiella parvula 2 Sp3g03100.v2.2, Sp3g20430.v2.2
Brassicaceae Brassica nigra 4 BniB01g059340.2N, BniB03g024780.2N, BniB07g032460.2N ...
BniB07g032470.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq07G1278
Casuarinaceae Casuarina glauca 1 Cgl07G1351
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno05g03570, gene.Cymno09g09580
Hydrocharitaceae Thalassia testudinum 1 gene.Thate03g04160
Nitrariaceae Nitraria sibirica 2 evm.TU.LG03.712, evm.TU.LG11.999
Plantaginaceae Plantago ovata 2 Pov_00021764, Pov_00022238
Plumbaginaceae Limonium bicolor 2 Lb1G00954, Lb1G08048
Poaceae Echinochloa crus-galli 4 BH01.2664, BH01.761, CH01.757, Contig309.108
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_2AG0136490, gene-QOZ80_2BG0192130 ...
gene-QOZ80_3AG0216460, gene-QOZ80_3BG0261780
Poaceae Hordeum vulgare 2 HORVU.MOREX.r3.5HG0510080.1.CDS1 ...
HORVU.MOREX.r3.6HG0592070.1.CDS1
Poaceae Lolium multiflorum 2 gene-QYE76_023481, gene-QYE76_061911
Poaceae Oryza coarctata 3 Oco03G014520, Oco04G014970, Oco06G024280
Poaceae Oryza sativa 1 LOC_Os02g38950.1
Poaceae Paspalum vaginatum 2 gene-BS78_01G083600, gene-BS78_04G186700
Poaceae Sporobolus alterniflorus 4 Chr01G005430, Chr09G012410, Chr12G037810, Chr13G008330
Poaceae Thinopyrum elongatum 1 Tel6E01G415700
Poaceae Triticum dicoccoides 4 gene_TRIDC5AG056230, gene_TRIDC5BG060280 ...
gene_TRIDC6AG033070, gene_TRIDC6BG039410
Poaceae Triticum aestivum 6 TraesCS5A02G384400.1.cds1, TraesCS5B02G389200.1.cds1 ...
TraesCS5D02G394000.1.cds1, TraesCS6A02G213800.1.cds1, TraesCS6B02G243800.1.cds1, TraesCS6D02G196400.1.cds1
Poaceae Zea mays 2 Zm00001eb057030_P001, Zm00001eb246390_P001
Poaceae Zoysia japonica 1 nbis-gene-23463
Poaceae Zoysia macrostachya 2 Zma_g13832, Zma_g494
Portulacaceae Portulaca oleracea 2 evm.TU.LG02.2560, evm.TU.LG13.94
Posidoniaceae Posidonia oceanica 3 gene.Posoc01g07610, gene.Posoc04g01610, gene.Posoc05g00670
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_17_RagTag.159, evm.TU.Scaffold_6_RagTag.775
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-15921, nbisL1-mrna-23199
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-16773, nbisL1-mrna-9301
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-14672, nbisL1-mrna-649
Rhizophoraceae Kandelia candel 2 add.evm.TU.utg000011l.190, add.evm.TU.utg000013l.29
Rhizophoraceae Kandelia obovata 1 Maker00006512
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-19530, nbisL1-mrna-22921
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-15954, nbisL1-mrna-3499
Salicaceae Populus euphratica 5 populus_peu07647, populus_peu21418, populus_peu21419 ...
populus_peu21420, populus_peu21689
Solanaceae Lycium barbarum 2 gene-LOC132609668, gene-LOC132641233
Solanaceae Solanum chilense 2 SOLCI004820900, SOLCI007024500
Solanaceae Solanum pennellii 2 gene-LOC107020744, gene-LOC107031368
Tamaricaceae Reaumuria soongarica 2 STRG.19726_chr07_+, gene_15533
Tamaricaceae Tamarix chinensis 2 TC04G0518, TC09G0412
Zosteraceae Zostera marina 3 Zosma01g34550.v3.1, Zosma01g40775.v3.1, Zosma04g00720.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.