Basic Information
Locus ID:
Chr13G007740
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 8146618 | 8163553 | - | Chr13G007740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 96 | 138 | 6.5E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 92 | 144 | 2.21E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 148 | 8.5E-16 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 97 | 138 | 10.881201 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 188 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_016899530.1 | uncharacterized protein LOC107990564 [Cucumis melo] | 0 |
| TrEMBL | A0A1E5VPT6 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0011821 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH07.2577, AH07.2578, BH07.2388, CH07.2462 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0137240, gene-QOZ80_2BG0192840 |
| Poaceae | Oryza coarctata | 1 | Oco03G015160 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G008410, Chr13G007740, Chr15G009920 |
| Poaceae | Zea mays | 2 | Zm00001eb246920_P001, Zm00001eb246930_P001 |