Basic Information
Locus ID:
Chr13G007710
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
AT hook motif family protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 8058987 | 8066512 | + | Chr13G007710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 535 | 575 | 0.00103166 | IPR002999 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 532 | 572 | 7.3E-8 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 77 | 279 | 2.26E-7 | IPR016024 |
| Gene3D | G3DSA:2.30.30.140 | - | 530 | 580 | 1.3E-12 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 658 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 606 | 633 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 767 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 637 | 657 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 533 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 532 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| Coils | Coil | Coil | 6 | 26 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80810.5 | - | 0 |
| RefSeq | XP_025804884.1 | ABC transporter F family member 4-like isoform X2 [Panicum hallii] | 0 |
| A8MRD9 | Sister chromatid cohesion protein PDS5 homolog D OS=Arabidopsis thaliana OX=3702 GN=PDS5D PE=2 SV=3 | 0 | |
| TrEMBL | A0A2S3GR96 | Tudor domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_1G304900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology