Basic Information
Locus ID:
Chr13G006520
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Double-stranded RNA binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 6633301 | 6642354 | - | Chr13G006520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 249 | 365 | 8.91295E-20 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 256 | 365 | 3.1E-8 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 817 | 879 | 1.3E-5 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 814 | 887 | 1.34E-13 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 696 | 758 | 4.8E-10 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 133 | 391 | 7.97E-22 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 699 | 777 | 8.7E-6 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 134 | 413 | 1.1E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 811 | 888 | 4.2E-8 | - |
| SMART | SM00358 | DRBM_3 | 694 | 758 | 0.017 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 817 | 883 | 0.0018 | IPR014720 |
| SMART | SM00577 | forpap2 | 213 | 374 | 8.2E-12 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 816 | 884 | 11.625511 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 139 | 390 | 17.080011 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 693 | 759 | 9.392092 | IPR014720 |
| Coils | Coil | Coil | 160 | 180 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_002452510.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Sorghum bicolor] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9V0Y9 | protein-serine/threonine phosphatase OS=Eragrostis curvula OX=38414 GN=EJB05_20614 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology