Basic Information
Locus ID:
Chr13G006490
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 6589449 | 6594661 | + | Chr13G006490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 43 | 96 | 1.82824E-24 | - |
| Pfam | PF13445 | RING-type zinc-finger | 45 | 92 | 1.1E-9 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 41 | 107 | 2.7E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 37 | 108 | 2.3E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 45 | 94 | 6.0E-11 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 45 | 95 | 12.872856 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 60 | 69 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 156 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_039790675.1 | E3 ubiquitin-protein ligase RMA1H1-like [Panicum virgatum] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SVL9 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_51466 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology