Basic Information
Locus ID:
Chr13G005390
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 5113588 | 5118802 | - | Chr13G005390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 216 | 258 | 2.0E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 210 | 264 | 7.95E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 186 | 264 | 4.5E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 217 | 257 | 1.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 217 | 258 | 11.722122 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08139.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034580998.1 | E3 ubiquitin-protein ligase CIP8-like [Setaria viridis] | 0 |
| Q5M974 | E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis OX=8364 GN=rnf181 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UXH9 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_19840 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19736, jg30596, jg40150 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_19720 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001333 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g113670 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30938, Sbi_jg58334 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25937 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004803 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl12846 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000004559, gene:ENSEOMG00000022186 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0018860, CQ.Regalona.r1.5BG0020090 |
| Apiaceae | Apium graveolens | 2 | Ag3G00774, Ag5G00813 |
| Arecaceae | Cocos nucifera | 3 | COCNU_01G006020, COCNU_01G014110, COCNU_11G005630 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103706600, gene-LOC103712744, gene-LOC103719514 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.3117.V1.1, AsparagusV1_05.2250.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri10G00631, Ftri13G03578, Ftri18G24145, Ftri1G23582 ... |
| Brassicaceae | Arabidopsis thaliana | 4 | AT3G02340.1, AT5G08139.1, AT5G15820.1, AT5G60820.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10009413m.g.v1.0, Thhalv10013685m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g24140.v2.2, Sp3g01400.v2.2, Sp6g28290.v2.2 ... |
| Brassicaceae | Brassica nigra | 7 | BniB02g053000.2N, BniB02g065690.2N, BniB02g076290.2N ... |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g03880, gene.Cymno02g06240 |
| Hydrocharitaceae | Thalassia testudinum | 6 | gene.Thate04g06930, gene.Thate04g27230, gene.Thate06g11390 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.483 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023738 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G26090 |
| Poaceae | Echinochloa crus-galli | 4 | AH08.1887, BH07.3135, BH08.1976, CH08.2162 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0144150, gene-QOZ80_2BG0199590 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0680350.1.CDS1 |
| Poaceae | Lolium multiflorum | 7 | gene-QYE76_003696, gene-QYE76_025200, gene-QYE76_027025 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G020530, Oco04G021170, Oco15G012160, Oco16G010430 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g49550.1, LOC_Os08g38060.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G262900, gene-BS78_07G172700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0306858 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr09G021110, Chr13G005390, Chr15G004650, Chr16G016310 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G526000, Tel7E01G436500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG044100, gene_TRIDC6BG051710 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS6A02G288800.1.cds1, TraesCS6B02G318600.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb033640_P001, Zm00001eb189830_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-17303, nbis-gene-21967, nbis-gene-47635 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g14327, Zma_g17069, Zma_g23173, Zma_g24282 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.102, evm.TU.LG09.1336, evm.TU.LG14.1889 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g21810, gene.Posoc03g07810 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.204, evm.TU.Scaffold_4_RagTag.816 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14240, nbisL1-mrna-28538 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11261, nbisL1-mrna-543 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14375, nbisL1-mrna-1565 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000005l.108, add.evm.TU.utg000008l.192 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000345, Maker00010312 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-22546, nbisL1-mrna-335 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19301 |
| Salicaceae | Populus euphratica | 4 | populus_peu22194, populus_peu28355, populus_peu37349 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132622575, gene-LOC132622765, gene-LOC132632818 |
| Solanaceae | Solanum chilense | 3 | SOLCI000542700, SOLCI002332800, SOLCI003994800 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107008975, gene-LOC107011707, gene-LOC107015261 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.14668_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0019 |
| Zosteraceae | Zostera marina | 1 | Zosma03g03950.v3.1 |