Basic Information
Locus ID:
Chr13G004860
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 4668227 | 4669698 | + | Chr13G004860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 13 | 84 | 1.9E-15 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 200 | 400 | 1.91E-17 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 7 | 85 | 2.65E-22 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 195 | 411 | 3.2E-18 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 90 | 1.2E-22 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 16 | 80 | 1.1E-21 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 12 | 87 | 26.335415 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_004953855.1 | U-box domain-containing protein 21 [Setaria italica] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UYX5 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_19965 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology