Basic Information
Locus ID:
Chr13G002140
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 1697056 | 1701459 | - | Chr13G002140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 223 | 277 | 1.0E-8 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 4.2E-8 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 208 | 9.1E-16 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 277 | 1.59E-53 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 320 | 375 | 6.36E-7 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 13 | 154 | 2.9E-31 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 155 | 297 | 1.2E-28 | IPR036770 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 4.9E-7 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.0076 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 3.6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 5.6E-5 | IPR002110 |
| SMART | SM00184 | ring_2 | 321 | 367 | 0.0025 | IPR001841 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 9.8E-4 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 8.629499 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 11.27379 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 208 | 12.99165 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 10.073198 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.142647 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 368 | 9.804232 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 10.31223 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.25033 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 9.224194 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 13.4373 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 8.613973 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 4.5E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 4.5E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_004954184.1 | probable E3 ubiquitin-protein ligase XBOS32 [Setaria italica] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | K3YRW7 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101769393 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology