Basic Information
Locus ID:
Chr13G001010
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 750041 | 758389 | + | Chr13G001010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 510 | 795 | 1.20995E-64 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 557 | 588 | 6.0E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 1.4E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 679 | 712 | 4.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 596 | 632 | 4.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 762 | 795 | 0.1 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 507 | 795 | 7.5E-60 | IPR036322 |
| SUPERFAMILY | SSF81995 | beta-sandwich domain of Sec23/24 | 359 | 418 | 2.88E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 648 | 795 | 1.7E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 502 | 647 | 1.0E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 715 | 754 | 0.53 | IPR001680 |
| SMART | SM00320 | WD40_4 | 507 | 546 | 7.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 756 | 795 | 8.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 592 | 632 | 3.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 674 | 712 | 9.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 549 | 588 | 3.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 635 | 671 | 32.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 556 | 588 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 763 | 795 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 599 | 641 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.035233 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 681 | 721 | 9.40565 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 599 | 633 | 8.597424 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 556 | 588 | 9.862871 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 763 | 795 | 12.209223 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 422 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_039778702.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X2 [Panicum virgatum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0XZB3 | LisH domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1KG539700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology