Basic Information
Locus ID:
Chr13G000760
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Functions as component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 586174 | 591924 | + | Chr13G000760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 106 | 174 | 2.0E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 46 | 83 | 0.21 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 333 | 368 | 0.18 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 13 | 371 | 9.15E-48 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 375 | 1.2E-136 | IPR015943 |
| SMART | SM00320 | WD40_4 | 4 | 40 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 45 | 84 | 0.0016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 195 | 234 | 3.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 134 | 174 | 3.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 368 | 1.4 | IPR001680 |
| PIRSF | PIRSF038093 | ARPC1 | 2 | 374 | 3.0E-148 | IPR017383 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 52 | 83 | 10.074014 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 142 | 174 | 9.97376 | IPR001680 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31300.1 | actin-related protein C1B. putative ARP2/3 protein complex subunit p41 | 0 |
| RefSeq | XP_039779008.1 | actin-related protein 2/3 complex subunit 1B-like [Panicum virgatum] | 0 |
| Q9SJW6 | Actin-related protein 2/3 complex subunit 1B OS=Arabidopsis thaliana OX=3702 GN=ARPC1B PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0XZX7 | Actin-related protein 2/3 complex subunit OS=Panicum virgatum OX=38727 GN=PVAP13_1KG544100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19267 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011578 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g210570 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11956, Sbi_jg46885 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21174 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009515 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80362, Sgl82824 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018209, gene:ENSEOMG00000039643 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0010230, CQ.Regalona.r1.9BG0012250 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30021640 |
| Apiaceae | Apium graveolens | 1 | Ag3G01448 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G011230 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706987 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1829.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G14524 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G30910.1, AT2G31300.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10017010m.g.v1.0, Thhalv10017625m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g13380.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g013290.2N, BniB06g019930.2N, BniB08g019270.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2905 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G3027 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g03520 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g07720 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2400 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004653 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G06330, Lb1G06342 |
| Poaceae | Echinochloa crus-galli | 2 | BH07.3762, CH07.3824 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0150470, gene-QOZ80_2BG0205930 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0629710.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_026596 |
| Poaceae | Oryza coarctata | 2 | Oco03G025350, Oco04G025830 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g57220.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G320200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604395 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G026170, Chr13G000760, Chr15G000730 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G707400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG058010, gene_TRIDC6BG067830 |
| Poaceae | Triticum aestivum | 4 | TraesCS6B02G432000.2, TraesCS6D02G377800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb191400_P003, Zm00001eb258930_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39805 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17418 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1559, evm.TU.LG15.1695 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g02640 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1577 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-20748, nbisL1-mrna-20749 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19014 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21553 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.998 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009341 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13982 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4516 |
| Salicaceae | Populus euphratica | 1 | populus_peu27129 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641436 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018592 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8596 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1889 |
| Zosteraceae | Zostera marina | 1 | Zosma01g34900.v3.1 |