Basic Information
Locus ID:
Chr13G000440
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000013 | 270249 | 280040 | - | Chr13G000440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 699 | 739 | 1.58349E-20 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 697 | 744 | 7.3E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 699 | 746 | 1.32E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 686 | 750 | 1.3E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 700 | 739 | 10.674659 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 239 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 331 | 357 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 586 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 428 | - | - |
| Coils | Coil | Coil | 629 | 649 | - | - |
| Coils | Coil | Coil | 70 | 90 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002453073.1 | uncharacterized protein LOC8059709 [Sorghum bicolor] | 0 |
| Q24746 | Protein neuralized OS=Drosophila virilis OX=7244 GN=neur PE=4 SV=1 | 0 | |
| TrEMBL | A0A5J9UWH3 | RING-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_19136 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology