Basic Information
Locus ID:
Chr12G038290
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 56852243 | 56857467 | + | Chr12G038290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 429 | 672 | 1.53085E-42 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 568 | 650 | 2.0E-4 | IPR024977 |
| Pfam | PF08513 | LisH | 10 | 35 | 2.7E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 433 | 460 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 510 | 545 | 6.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 471 | 502 | 4.4E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 429 | 673 | 7.48E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 396 | 566 | 1.1E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 567 | 675 | 2.5E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 463 | 502 | 2.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 632 | 671 | 1.9 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0024 | IPR006594 |
| SMART | SM00320 | WD40_4 | 421 | 460 | 4.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 591 | 629 | 5.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 552 | 587 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 506 | 546 | 8.8E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 513 | 547 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 470 | 502 | 11.5765 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 470 | 502 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.332006 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 428 | 469 | 9.004632 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 322 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_025794282.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Panicum hallii] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W8K7 | LisH domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_03701 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology