Basic Information
Locus ID:
Chr12G037930
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 56430616 | 56432351 | + | Chr12G037930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 10 | 212 | 1.8E-64 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 103 | 202 | 2.16E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 106 | 215 | 7.8E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 111 | 203 | 26.465319 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_039828626.1 | auxin-responsive protein IAA13-like [Panicum virgatum] | 0 |
| A2XLV9 | Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica OX=39946 GN=IAA13 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9WCP3 | Auxin-responsive protein OS=Eragrostis curvula OX=38414 GN=EJB05_04567 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology