Basic Information
Locus ID:
Chr12G037730
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 56255543 | 56265222 | - | Chr12G037730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 1164 | 1225 | 7.45943E-4 | - |
| CDD | cd15539 | PHD1_AIRE | 969 | 1008 | 1.0609E-15 | - |
| Pfam | PF16135 | Tify domain binding domain | 890 | 940 | 4.1E-13 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1156 | 1245 | 1.27E-6 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 952 | 1010 | 5.54E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 957 | 1068 | 1.5E-17 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 1146 | 1258 | 5.0E-5 | - |
| SMART | SM00249 | PHD_3 | 968 | 1009 | 1.5E-11 | IPR001965 |
| SMART | SM00249 | PHD_3 | 1010 | 1070 | 7.5 | IPR001965 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 1104 | 1262 | 10.152823 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 966 | 1011 | 9.9884 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 969 | 1008 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 556 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 610 | 644 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 560 | 581 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 678 | 693 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 698 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 601 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 655 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 487 | - | - |
| Coils | Coil | Coil | 798 | 818 | - | - |
| Coils | Coil | Coil | 773 | 793 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G36740.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_004981793.1 | uncharacterized protein LOC101774449 isoform X1 [Setaria italica] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WA41 | TDBD domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_04507 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology