Basic Information
Locus ID:
Chr12G033690
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 52966353 | 52970695 | + | Chr12G033690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 373 | 454 | 4.4E-17 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 471 | 502 | 4.4E-8 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 373 | 455 | 5.0E-25 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 531 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 531 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 245 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 107 | - | - |
| Coils | Coil | Coil | 407 | 436 | - | - |
| Coils | Coil | Coil | 300 | 320 | - | - |
| Coils | Coil | Coil | 362 | 404 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_004981310.1 | uncharacterized protein LOC101753781 [Setaria italica] | 0 |
| TrEMBL | A0A5J9WAS9 | PAPA-1 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_03887 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology