Basic Information
Locus ID:
Chr12G030250
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 49623598 | 49628736 | + | Chr12G030250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 309 | 334 | 2.9E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 267 | 295 | 0.0011 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 336 | 369 | 3.85E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 262 | 293 | 4.51E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 304 | 336 | 2.88E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 260 | 296 | 3.4E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 336 | 369 | 5.7E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 303 | 335 | 4.0E-10 | - |
| SMART | SM00547 | zf_4 | 308 | 332 | 3.4E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 341 | 365 | 1.7E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 269 | 293 | 0.041 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 306 | 335 | 9.43879 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 339 | 368 | 9.258115 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 267 | 296 | 9.156486 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 310 | 329 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 271 | 290 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 343 | 362 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 477 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_002466591.1 | zinc finger protein VAR3, chloroplastic [Sorghum bicolor] | 0 |
| TrEMBL | A0A5J9WC36 | Zinc finger protein VAR3, chloroplastic OS=Eragrostis curvula OX=38414 GN=EJB05_04931 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology