Basic Information
Locus ID:
Chr12G028570
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
NPR1/NIM1 like defence protein C terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 47723407 | 47741232 | - | Chr12G028570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02892 | BED zinc finger | 602 | 645 | 9.8E-5 | IPR003656 |
| Pfam | PF12313 | NPR1/NIM1 like defence protein C terminal | 330 | 532 | 1.8E-60 | IPR021094 |
| Pfam | PF13637 | Ankyrin repeats (many copies) | 258 | 300 | 3.8E-6 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 13 | 148 | 1.1E-8 | IPR011333 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 229 | 331 | 3.73E-13 | IPR036770 |
| SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 602 | 653 | 6.78E-6 | IPR036236 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 3 | 182 | 2.3E-13 | IPR011333 |
| Gene3D | G3DSA:1.25.40.20 | - | 223 | 361 | 4.7E-15 | IPR036770 |
| SMART | SM00248 | ANK_2a | 254 | 284 | 620.0 | IPR002110 |
| SMART | SM00614 | bed5 | 599 | 649 | 5.5E-12 | - |
| SMART | SM00248 | ANK_2a | 288 | 317 | 0.12 | IPR002110 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 103 | 10.219954 | IPR000210 |
| ProSiteProfiles | PS50808 | Zinc finger BED-type profile. | 599 | 654 | 10.261286 | IPR003656 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 288 | 315 | 9.430799 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 288 | 315 | 9.409914 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19660.1 | NPR1-like protein 4. Encodes a ankyrin repeat BTB/POZ domain-containing protein with 36% sequence identity with NPR1. Mutants are more susceptible to the bacterial pathogen Pseudomonas syringe pv. tomato DC3000 and to the fungal pathogen Erysiphe cichoracearum, but do not differ markedly from wild type in interaction with virulent and avirulent strains of the oomycete Peronospora parasitica. NPR4 is required for basal defense against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways. | 0 |
| RefSeq | XP_004982222.1 | BTB/POZ domain and ankyrin repeat-containing protein NPR3 [Setaria italica] | 0 |
| Q75HA6 | BTB/POZ domain and ankyrin repeat-containing protein NPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=NPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WET0 | BED-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_05276 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G008650, Chr12G028570 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g793 |