Basic Information
Locus ID:
Chr12G028250
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc knuckle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 47464816 | 47473143 | - | Chr12G028250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 217 | 258 | 8.68623E-14 | - |
| Pfam | PF13696 | Zinc knuckle | 153 | 173 | 1.1E-6 | IPR025829 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 125 | 173 | 1.36E-6 | IPR036875 |
| SUPERFAMILY | SSF57850 | RING/U-box | 206 | 281 | 2.96E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 200 | 297 | 1.8E-12 | IPR013083 |
| Gene3D | G3DSA:4.10.60.10 | - | 149 | 194 | 2.0E-11 | - |
| SMART | SM00343 | c2hcfinal6 | 131 | 147 | 1.1 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 157 | 173 | 0.085 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 503 | 617 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 617 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 530 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.3 | DWNN domain, a CCHC-type zinc finger. | 0 |
| RefSeq | XP_034572689.1 | E3 ubiquitin ligase PQT3-like [Setaria viridis] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WBV3 | E3 ubiquitin ligase PQT3-like OS=Eragrostis curvula OX=38414 GN=EJB05_05332 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology